PBS windows of interest

For each sample set, we first provide a summary plot of PBS across the genome, with PBS shown in blue and the results of the 200 randomisations shown behind in grey. Windows identified as peaks are highlighted by points, colour-coded by whether they are significantly higher than expected based on the simulations (green) or not (purple). For each significant window (green points), we then provide its own plot showing the significant (P < 0.01) SNPs found in the region of that window, and their -log10(Pvalue) of association with phenotype. Red points indicate non-synonymous SNPs, blue points indicate all other SNPs. Point shape indicates whether the mutant allele at that SNP is associated with increased (circle) or decreased (triangle) resistance. Dark points in the centre of the plot show SNPs within the significant window, light points on the sides show SNPs in the region 10,000 bp either side of the window.

Legend
Avrankou_coluzzii_Delta
Baguida_gambiae_Delta
Korle-Bu_coluzzii_Delta
Madina_gambiae_Delta
Obuasi_gambiae_Delta
Baguida_gambiae_PM
Korle-Bu_coluzzii_PM
Madina_gambiae_PM
Obuasi_gambiae_PM


Plot legend

legend


Avrankou_coluzzii_Delta

Avrankou_coluzzii_Delta_peak_filter

 

Avrankou_coluzzii_Delta_2L:10075762
Avrankou_coluzzii_Delta_2R:36536888
Avrankou_coluzzii_Delta_2R:40059143
Avrankou_coluzzii_Delta_2R:50397087
Avrankou_coluzzii_Delta_2R:57936779
Avrankou_coluzzii_Delta_2R:58017231
Avrankou_coluzzii_Delta_3R:40583507
Avrankou_coluzzii_Delta_3R:42095383
Avrankou_coluzzii_Delta_3R:43486612
Avrankou_coluzzii_Delta_3R:43532647
Avrankou_coluzzii_Delta_X:16349957

Avrankou_coluzzii_Delta_2L_10075762

 

Avrankou_coluzzii_Delta_2L:10075762_overview

 

Avrankou_coluzzii_Delta_2R_36536888

 

Avrankou_coluzzii_Delta_2R:36536888_overview

 

Avrankou_coluzzii_Delta_2R_40059143

 

Avrankou_coluzzii_Delta_2R:40059143_overview

 

Avrankou_coluzzii_Delta_2R_50397087

 

Avrankou_coluzzii_Delta_2R:50397087_overview

 

Avrankou_coluzzii_Delta_2R_57936779

 

Avrankou_coluzzii_Delta_2R:57936779_overview

 

Avrankou_coluzzii_Delta_2R_58017231

 

Avrankou_coluzzii_Delta_2R:58017231_overview

 

Avrankou_coluzzii_Delta_3R_40583507

 

Avrankou_coluzzii_Delta_3R:40583507_overview

 

Avrankou_coluzzii_Delta_3R_42095383

 

Avrankou_coluzzii_Delta_3R:42095383_overview

 

Avrankou_coluzzii_Delta_3R_43486612

 

Avrankou_coluzzii_Delta_3R:43486612_overview

 

Avrankou_coluzzii_Delta_3R_43532647

 

Avrankou_coluzzii_Delta_3R:43532647_overview

 

Avrankou_coluzzii_Delta_X_16349957

 

Avrankou_coluzzii_Delta_X:16349957_overview

 


Baguida_gambiae_Delta

Baguida_gambiae_Delta_peak_filter

 

Baguida_gambiae_Delta_2R:3411049
Baguida_gambiae_Delta_2R:3453444
Baguida_gambiae_Delta_2R:52110329
Baguida_gambiae_Delta_2R:53504721
Baguida_gambiae_Delta_3R:50086331
Baguida_gambiae_Delta_3R:50126025

Baguida_gambiae_Delta_2R_3411049

 

Baguida_gambiae_Delta_2R:3411049_overview

 

Baguida_gambiae_Delta_2R_3453444

 

Baguida_gambiae_Delta_2R:3453444_overview

 

Baguida_gambiae_Delta_2R_52110329

 

Baguida_gambiae_Delta_2R:52110329_overview

 

Baguida_gambiae_Delta_2R_53504721

 

Baguida_gambiae_Delta_2R:53504721_overview

 

Baguida_gambiae_Delta_3R_50086331

 

Baguida_gambiae_Delta_3R:50086331_overview

 

Baguida_gambiae_Delta_3R_50126025

 

Baguida_gambiae_Delta_3R:50126025_overview

 


Korle-Bu_coluzzii_Delta

Korle-Bu_coluzzii_Delta_peak_filter

 

Korle-Bu_coluzzii_Delta_2R:19795384
Korle-Bu_coluzzii_Delta_2R:19935256
Korle-Bu_coluzzii_Delta_2R:24507343
Korle-Bu_coluzzii_Delta_2R:24528127
Korle-Bu_coluzzii_Delta_2R:24867722
Korle-Bu_coluzzii_Delta_2R:40748811
Korle-Bu_coluzzii_Delta_2R:40775991
Korle-Bu_coluzzii_Delta_2R:49194797
Korle-Bu_coluzzii_Delta_2R:58948322
Korle-Bu_coluzzii_Delta_2R:59097397
Korle-Bu_coluzzii_Delta_2R:59368196
Korle-Bu_coluzzii_Delta_X:15660088
Korle-Bu_coluzzii_Delta_X:15703693
Korle-Bu_coluzzii_Delta_X:15798349
Korle-Bu_coluzzii_Delta_X:15836204
Korle-Bu_coluzzii_Delta_X:19194835

Korle-Bu_coluzzii_Delta_2R_19795384

 

Korle-Bu_coluzzii_Delta_2R:19795384_overview

 

Korle-Bu_coluzzii_Delta_2R_19935256

 

Korle-Bu_coluzzii_Delta_2R:19935256_overview

 

Korle-Bu_coluzzii_Delta_2R_24507343

 

Korle-Bu_coluzzii_Delta_2R:24507343_overview

 

Korle-Bu_coluzzii_Delta_2R_24528127

 

Korle-Bu_coluzzii_Delta_2R:24528127_overview

 

Korle-Bu_coluzzii_Delta_2R_24867722

 

Korle-Bu_coluzzii_Delta_2R:24867722_overview

 

Korle-Bu_coluzzii_Delta_2R_40748811

 

Korle-Bu_coluzzii_Delta_2R:40748811_overview

 

Korle-Bu_coluzzii_Delta_2R_40775991

 

Korle-Bu_coluzzii_Delta_2R:40775991_overview

 

Korle-Bu_coluzzii_Delta_2R_49194797

 

Korle-Bu_coluzzii_Delta_2R:49194797_overview

 

Korle-Bu_coluzzii_Delta_2R_58948322

 

Korle-Bu_coluzzii_Delta_2R:58948322_overview

 

Korle-Bu_coluzzii_Delta_2R_59097397

 

Korle-Bu_coluzzii_Delta_2R:59097397_overview

 

Korle-Bu_coluzzii_Delta_2R_59368196

 

Korle-Bu_coluzzii_Delta_2R:59368196_overview

 

Korle-Bu_coluzzii_Delta_X_15660088

 

Korle-Bu_coluzzii_Delta_X:15660088_overview

 

Korle-Bu_coluzzii_Delta_X_15703693

 

Korle-Bu_coluzzii_Delta_X:15703693_overview

 

Korle-Bu_coluzzii_Delta_X_15798349

 

Korle-Bu_coluzzii_Delta_X:15798349_overview

 

Korle-Bu_coluzzii_Delta_X_15836204

 

Korle-Bu_coluzzii_Delta_X:15836204_overview

 

Korle-Bu_coluzzii_Delta_X_19194835

 

Korle-Bu_coluzzii_Delta_X:19194835_overview

 


Madina_gambiae_Delta

Madina_gambiae_Delta_peak_filter

 

Madina_gambiae_Delta_2L:14079208
Madina_gambiae_Delta_2L:14235728
Madina_gambiae_Delta_2L:14276791
Madina_gambiae_Delta_2L:15136081
Madina_gambiae_Delta_2L:15613228
Madina_gambiae_Delta_2R:24638486
Madina_gambiae_Delta_2R:28466877
Madina_gambiae_Delta_3L:10952426
Madina_gambiae_Delta_3L:10990152
Madina_gambiae_Delta_3L:13952703
Madina_gambiae_Delta_3L:14016877
Madina_gambiae_Delta_3L:14034923
Madina_gambiae_Delta_X:14317604
Madina_gambiae_Delta_X:14369513

Madina_gambiae_Delta_2L_14079208

 

Madina_gambiae_Delta_2L:14079208_overview

 

Madina_gambiae_Delta_2L_14235728

 

Madina_gambiae_Delta_2L:14235728_overview

 

Madina_gambiae_Delta_2L_14276791

 

Madina_gambiae_Delta_2L:14276791_overview

 

Madina_gambiae_Delta_2L_15136081

 

Madina_gambiae_Delta_2L:15136081_overview

 

Madina_gambiae_Delta_2L_15613228

 

Madina_gambiae_Delta_2L:15613228_overview

 

Madina_gambiae_Delta_2R_24638486

 

Madina_gambiae_Delta_2R:24638486_overview

 

Madina_gambiae_Delta_2R_28466877

 

Madina_gambiae_Delta_2R:28466877_overview

 

Madina_gambiae_Delta_3L_10952426

 

Madina_gambiae_Delta_3L:10952426_overview

 

Madina_gambiae_Delta_3L_10990152

 

Madina_gambiae_Delta_3L:10990152_overview

 

Madina_gambiae_Delta_3L_13952703

 

Madina_gambiae_Delta_3L:13952703_overview

 

Madina_gambiae_Delta_3L_14016877

 

Madina_gambiae_Delta_3L:14016877_overview

 

Madina_gambiae_Delta_3L_14034923

 

Madina_gambiae_Delta_3L:14034923_overview

 

Madina_gambiae_Delta_X_14317604

 

Madina_gambiae_Delta_X:14317604_overview

 

Madina_gambiae_Delta_X_14369513

 

Madina_gambiae_Delta_X:14369513_overview

 


Obuasi_gambiae_Delta

Obuasi_gambiae_Delta_peak_filter

 

Obuasi_gambiae_Delta_2R:28289136
Obuasi_gambiae_Delta_2R:28425075
Obuasi_gambiae_Delta_2R:28464858
Obuasi_gambiae_Delta_2R:28511074
Obuasi_gambiae_Delta_3L:38536401
Obuasi_gambiae_Delta_3R:10596787
Obuasi_gambiae_Delta_3R:10636722
Obuasi_gambiae_Delta_3R:6860221
Obuasi_gambiae_Delta_3R:6894288
Obuasi_gambiae_Delta_3R:6908903
Obuasi_gambiae_Delta_3R:6944074

Obuasi_gambiae_Delta_2R_28289136

 

Obuasi_gambiae_Delta_2R:28289136_overview

 

Obuasi_gambiae_Delta_2R_28425075

 

Obuasi_gambiae_Delta_2R:28425075_overview

 

Obuasi_gambiae_Delta_2R_28464858

 

Obuasi_gambiae_Delta_2R:28464858_overview

 

Obuasi_gambiae_Delta_2R_28511074

 

Obuasi_gambiae_Delta_2R:28511074_overview

 

Obuasi_gambiae_Delta_3L_38536401

 

Obuasi_gambiae_Delta_3L:38536401_overview

 

Obuasi_gambiae_Delta_3R_10596787

 

Obuasi_gambiae_Delta_3R:10596787_overview

 

Obuasi_gambiae_Delta_3R_10636722

 

Obuasi_gambiae_Delta_3R:10636722_overview

 

Obuasi_gambiae_Delta_3R_6860221

 

Obuasi_gambiae_Delta_3R:6860221_overview

 

Obuasi_gambiae_Delta_3R_6894288

 

Obuasi_gambiae_Delta_3R:6894288_overview

 

Obuasi_gambiae_Delta_3R_6908903

 

Obuasi_gambiae_Delta_3R:6908903_overview

 

Obuasi_gambiae_Delta_3R_6944074

 

Obuasi_gambiae_Delta_3R:6944074_overview

 


Baguida_gambiae_PM

Baguida_gambiae_PM_peak_filter

 

Baguida_gambiae_PM_X:4481600

Baguida_gambiae_PM_X_4481600

 

Baguida_gambiae_PM_X:4481600_overview

 


Korle-Bu_coluzzii_PM

Korle-Bu_coluzzii_PM_peak_filter

 

Korle-Bu_coluzzii_PM_2L:20512784
Korle-Bu_coluzzii_PM_2L:42166138
Korle-Bu_coluzzii_PM_2R:20360304
Korle-Bu_coluzzii_PM_2R:38099416
Korle-Bu_coluzzii_PM_2R:38131522
Korle-Bu_coluzzii_PM_2R:54401839
Korle-Bu_coluzzii_PM_3L:12686869
Korle-Bu_coluzzii_PM_3R:28478380
Korle-Bu_coluzzii_PM_3R:28503198
Korle-Bu_coluzzii_PM_3R:28531750
Korle-Bu_coluzzii_PM_3R:28562261
Korle-Bu_coluzzii_PM_3R:28648828

Korle-Bu_coluzzii_PM_2L_20512784

 

Korle-Bu_coluzzii_PM_2L:20512784_overview

 

Korle-Bu_coluzzii_PM_2L_42166138

 

Korle-Bu_coluzzii_PM_2L:42166138_overview

 

Korle-Bu_coluzzii_PM_2R_20360304

 

Korle-Bu_coluzzii_PM_2R:20360304_overview

 

Korle-Bu_coluzzii_PM_2R_38099416

 

Korle-Bu_coluzzii_PM_2R:38099416_overview

 

Korle-Bu_coluzzii_PM_2R_38131522

 

Korle-Bu_coluzzii_PM_2R:38131522_overview

 

Korle-Bu_coluzzii_PM_2R_54401839

 

Korle-Bu_coluzzii_PM_2R:54401839_overview

 

Korle-Bu_coluzzii_PM_3L_12686869

 

Korle-Bu_coluzzii_PM_3L:12686869_overview

 

Korle-Bu_coluzzii_PM_3R_28478380

 

Korle-Bu_coluzzii_PM_3R:28478380_overview

 

Korle-Bu_coluzzii_PM_3R_28503198

 

Korle-Bu_coluzzii_PM_3R:28503198_overview

 

Korle-Bu_coluzzii_PM_3R_28531750

 

Korle-Bu_coluzzii_PM_3R:28531750_overview

 

Korle-Bu_coluzzii_PM_3R_28562261

 

Korle-Bu_coluzzii_PM_3R:28562261_overview

 

Korle-Bu_coluzzii_PM_3R_28648828

 

Korle-Bu_coluzzii_PM_3R:28648828_overview

 


Madina_gambiae_PM

Madina_gambiae_PM_peak_filter

 

Madina_gambiae_PM_2L:13810050
Madina_gambiae_PM_2L:13835438
Madina_gambiae_PM_2L:13857697
Madina_gambiae_PM_2R:2909619
Madina_gambiae_PM_2R:2924284
Madina_gambiae_PM_2R:2937977
Madina_gambiae_PM_2R:2952746
Madina_gambiae_PM_2R:2966523
Madina_gambiae_PM_2R:3022442
Madina_gambiae_PM_2R:3035126
Madina_gambiae_PM_2R:3048496
Madina_gambiae_PM_2R:3066659
Madina_gambiae_PM_2R:3082612
Madina_gambiae_PM_2R:3098810
Madina_gambiae_PM_3L:11845057
Madina_gambiae_PM_3L:8379569
Madina_gambiae_PM_3R:42366567
Madina_gambiae_PM_X:10930275
Madina_gambiae_PM_X:10958263
Madina_gambiae_PM_X:14496426
Madina_gambiae_PM_X:14521612

Madina_gambiae_PM_2L_13810050

 

Madina_gambiae_PM_2L:13810050_overview

 

Madina_gambiae_PM_2L_13835438

 

Madina_gambiae_PM_2L:13835438_overview

 

Madina_gambiae_PM_2L_13857697

 

Madina_gambiae_PM_2L:13857697_overview

 

Madina_gambiae_PM_2R_2909619

 

Madina_gambiae_PM_2R:2909619_overview

 

Madina_gambiae_PM_2R_2924284

 

Madina_gambiae_PM_2R:2924284_overview

 

Madina_gambiae_PM_2R_2937977

 

Madina_gambiae_PM_2R:2937977_overview

 

Madina_gambiae_PM_2R_2952746

 

Madina_gambiae_PM_2R:2952746_overview

 

Madina_gambiae_PM_2R_2966523

 

Madina_gambiae_PM_2R:2966523_overview

 

Madina_gambiae_PM_2R_3022442

 

Madina_gambiae_PM_2R:3022442_overview

 

Madina_gambiae_PM_2R_3035126

 

Madina_gambiae_PM_2R:3035126_overview

 

Madina_gambiae_PM_2R_3048496

 

Madina_gambiae_PM_2R:3048496_overview

 

Madina_gambiae_PM_2R_3066659

 

Madina_gambiae_PM_2R:3066659_overview

 

Madina_gambiae_PM_2R_3082612

 

Madina_gambiae_PM_2R:3082612_overview

 

Madina_gambiae_PM_2R_3098810

 

Madina_gambiae_PM_2R:3098810_overview

 

Madina_gambiae_PM_3L_11845057

 

Madina_gambiae_PM_3L:11845057_overview

 

Madina_gambiae_PM_3L_8379569

 

Madina_gambiae_PM_3L:8379569_overview

 

Madina_gambiae_PM_3R_42366567

 

Madina_gambiae_PM_3R:42366567_overview

 

Madina_gambiae_PM_X_10930275

 

Madina_gambiae_PM_X:10930275_overview

 

Madina_gambiae_PM_X_10958263

 

Madina_gambiae_PM_X:10958263_overview

 

Madina_gambiae_PM_X_14496426

 

Madina_gambiae_PM_X:14496426_overview

 

Madina_gambiae_PM_X_14521612

 

Madina_gambiae_PM_X:14521612_overview

 


Obuasi_gambiae_PM

Obuasi_gambiae_PM_peak_filter

 

Obuasi_gambiae_PM_2R:3018207
Obuasi_gambiae_PM_3L:39831247
Obuasi_gambiae_PM_3L:39848513
Obuasi_gambiae_PM_3R:48480402
Obuasi_gambiae_PM_3R:48535299
Obuasi_gambiae_PM_X:14032886
Obuasi_gambiae_PM_X:14078096
Obuasi_gambiae_PM_X:14375402
Obuasi_gambiae_PM_X:14696755
Obuasi_gambiae_PM_X:14729619

Obuasi_gambiae_PM_2R_3018207

 

Obuasi_gambiae_PM_2R:3018207_overview

 

Obuasi_gambiae_PM_3L_39831247

 

Obuasi_gambiae_PM_3L:39831247_overview

 

Obuasi_gambiae_PM_3L_39848513

 

Obuasi_gambiae_PM_3L:39848513_overview

 

Obuasi_gambiae_PM_3R_48480402

 

Obuasi_gambiae_PM_3R:48480402_overview

 

Obuasi_gambiae_PM_3R_48535299

 

Obuasi_gambiae_PM_3R:48535299_overview

 

Obuasi_gambiae_PM_X_14032886

 

Obuasi_gambiae_PM_X:14032886_overview

 

Obuasi_gambiae_PM_X_14078096

 

Obuasi_gambiae_PM_X:14078096_overview

 

Obuasi_gambiae_PM_X_14375402

 

Obuasi_gambiae_PM_X:14375402_overview

 

Obuasi_gambiae_PM_X_14696755

 

Obuasi_gambiae_PM_X:14696755_overview

 

Obuasi_gambiae_PM_X_14729619

 

Obuasi_gambiae_PM_X:14729619_overview