For each sample set, we first provide a summary plot of PBS across the genome, with PBS shown in blue and the results of the 200 randomisations shown behind in grey. Windows identified as peaks are highlighted by points, colour-coded by whether they are significantly higher than expected based on the simulations (green) or not (purple). For each significant window (green points), we then provide its own plot showing the significant (P < 0.01) SNPs found in the region of that window, and their -log10(Pvalue) of association with phenotype. Red points indicate non-synonymous SNPs, blue points indicate all other SNPs. Point shape indicates whether the mutant allele at that SNP is associated with increased (circle) or decreased (triangle) resistance. Dark points in the centre of the plot show SNPs within the significant window, light points on the sides show SNPs in the region 10,000 bp either side of the window.
Legend
Avrankou_coluzzii_Delta
Baguida_gambiae_Delta
Korle-Bu_coluzzii_Delta
Madina_gambiae_Delta
Obuasi_gambiae_Delta
Baguida_gambiae_PM
Korle-Bu_coluzzii_PM
Madina_gambiae_PM
Obuasi_gambiae_PM
Avrankou_coluzzii_Delta_2L:10075762
Avrankou_coluzzii_Delta_2R:36536888
Avrankou_coluzzii_Delta_2R:40059143
Avrankou_coluzzii_Delta_2R:50397087
Avrankou_coluzzii_Delta_2R:57936779
Avrankou_coluzzii_Delta_2R:58017231
Avrankou_coluzzii_Delta_3R:40583507
Avrankou_coluzzii_Delta_3R:42095383
Avrankou_coluzzii_Delta_3R:43486612
Avrankou_coluzzii_Delta_3R:43532647
Avrankou_coluzzii_Delta_X:16349957
Baguida_gambiae_Delta_2R:3411049
Baguida_gambiae_Delta_2R:3453444
Baguida_gambiae_Delta_2R:52110329
Baguida_gambiae_Delta_2R:53504721
Baguida_gambiae_Delta_3R:50086331
Baguida_gambiae_Delta_3R:50126025
Korle-Bu_coluzzii_Delta_2R:19795384
Korle-Bu_coluzzii_Delta_2R:19935256
Korle-Bu_coluzzii_Delta_2R:24507343
Korle-Bu_coluzzii_Delta_2R:24528127
Korle-Bu_coluzzii_Delta_2R:24867722
Korle-Bu_coluzzii_Delta_2R:40748811
Korle-Bu_coluzzii_Delta_2R:40775991
Korle-Bu_coluzzii_Delta_2R:49194797
Korle-Bu_coluzzii_Delta_2R:58948322
Korle-Bu_coluzzii_Delta_2R:59097397
Korle-Bu_coluzzii_Delta_2R:59368196
Korle-Bu_coluzzii_Delta_X:15660088
Korle-Bu_coluzzii_Delta_X:15703693
Korle-Bu_coluzzii_Delta_X:15798349
Korle-Bu_coluzzii_Delta_X:15836204
Korle-Bu_coluzzii_Delta_X:19194835
Madina_gambiae_Delta_2L:14079208
Madina_gambiae_Delta_2L:14235728
Madina_gambiae_Delta_2L:14276791
Madina_gambiae_Delta_2L:15136081
Madina_gambiae_Delta_2L:15613228
Madina_gambiae_Delta_2R:24638486
Madina_gambiae_Delta_2R:28466877
Madina_gambiae_Delta_3L:10952426
Madina_gambiae_Delta_3L:10990152
Madina_gambiae_Delta_3L:13952703
Madina_gambiae_Delta_3L:14016877
Madina_gambiae_Delta_3L:14034923
Madina_gambiae_Delta_X:14317604
Madina_gambiae_Delta_X:14369513
Obuasi_gambiae_Delta_2R:28289136
Obuasi_gambiae_Delta_2R:28425075
Obuasi_gambiae_Delta_2R:28464858
Obuasi_gambiae_Delta_2R:28511074
Obuasi_gambiae_Delta_3L:38536401
Obuasi_gambiae_Delta_3R:10596787
Obuasi_gambiae_Delta_3R:10636722
Obuasi_gambiae_Delta_3R:6860221
Obuasi_gambiae_Delta_3R:6894288
Obuasi_gambiae_Delta_3R:6908903
Obuasi_gambiae_Delta_3R:6944074
Korle-Bu_coluzzii_PM_2L:20512784
Korle-Bu_coluzzii_PM_2L:42166138
Korle-Bu_coluzzii_PM_2R:20360304
Korle-Bu_coluzzii_PM_2R:38099416
Korle-Bu_coluzzii_PM_2R:38131522
Korle-Bu_coluzzii_PM_2R:54401839
Korle-Bu_coluzzii_PM_3L:12686869
Korle-Bu_coluzzii_PM_3R:28478380
Korle-Bu_coluzzii_PM_3R:28503198
Korle-Bu_coluzzii_PM_3R:28531750
Korle-Bu_coluzzii_PM_3R:28562261
Korle-Bu_coluzzii_PM_3R:28648828
Madina_gambiae_PM_2L:13810050
Madina_gambiae_PM_2L:13835438
Madina_gambiae_PM_2L:13857697
Madina_gambiae_PM_2R:2909619
Madina_gambiae_PM_2R:2924284
Madina_gambiae_PM_2R:2937977
Madina_gambiae_PM_2R:2952746
Madina_gambiae_PM_2R:2966523
Madina_gambiae_PM_2R:3022442
Madina_gambiae_PM_2R:3035126
Madina_gambiae_PM_2R:3048496
Madina_gambiae_PM_2R:3066659
Madina_gambiae_PM_2R:3082612
Madina_gambiae_PM_2R:3098810
Madina_gambiae_PM_3L:11845057
Madina_gambiae_PM_3L:8379569
Madina_gambiae_PM_3R:42366567
Madina_gambiae_PM_X:10930275
Madina_gambiae_PM_X:10958263
Madina_gambiae_PM_X:14496426
Madina_gambiae_PM_X:14521612
Obuasi_gambiae_PM_2R:3018207
Obuasi_gambiae_PM_3L:39831247
Obuasi_gambiae_PM_3L:39848513
Obuasi_gambiae_PM_3R:48480402
Obuasi_gambiae_PM_3R:48535299
Obuasi_gambiae_PM_X:14032886
Obuasi_gambiae_PM_X:14078096
Obuasi_gambiae_PM_X:14375402
Obuasi_gambiae_PM_X:14696755
Obuasi_gambiae_PM_X:14729619
